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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031962 Open in IMG/M |
| Scaffold ID | Ga0307479_10000002 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 580714 |
| Total Scaffold Genes | 547 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 379 (69.29%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000238 | Metagenome / Metatranscriptome | 1494 | Y |
| F000269 | Metagenome / Metatranscriptome | 1410 | Y |
| F000348 | Metagenome / Metatranscriptome | 1250 | Y |
| F000900 | Metagenome / Metatranscriptome | 845 | Y |
| F022484 | Metagenome / Metatranscriptome | 214 | Y |
| F095374 | Metagenome / Metatranscriptome | 105 | Y |
| F099609 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307479_10000002125 | F000269 | GGAG | MRTQMTIRSNFATLALIPLLAAMGLASEPAAPKPTDVPATVIAHLPLPQTTGSQMLLQKENGKEYLYVQQSSKQGFMVVDVTKPDKPNLLKRTAQSDQATSGNLEMLSPDVAIAQAPEKTSNTLTSNPRVTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHALIYLTNDEGLWILRYNHPSLLEPAKKKRPCDSESEIAAMPPDCD |
| Ga0307479_10000002223 | F099609 | GGAGG | MHFLLATTLLVLSAALALAQNQSHVQDQTQSMAKLCAPASIITASHDVEVIVQRVMLSGKWGHNEATVYLPDKEIADGAILFSHSAIHTDSGAAVDLLPFALTLAHAGAAVIVPERTLIWPPTERSMNREGAVVICAEHWLIDHTKVFNNGEALLKMVNDKNVVVREGYAYVGPRLCDPTVPSDCEFMDPFISEDCALKHYCCVSAMSASVGEIEGGDNTRGILSDGGLWMAQRLQKVLGLAPIKALVVAPSSSGS |
| Ga0307479_10000002246 | F000238 | GGA | MGHWTQQSLRMKKQRMTSVIASRSPRWYGIPVRVLLVTFIGTLLCFAVSLLLGILGTVIGAALRGVHPDMRMAYRAIAIPMALVAGGIVFVSVLVMEIRHYRQAKTLAAIEKLG |
| Ga0307479_10000002339 | F095374 | GGAGG | MSNQALHAALFLLFLSGFLFSQSAPQTAPLPYDPLELATGPTLVPNTPEQRATILNLLERTRQNSAMHIPGTAPFDIKVSFNSVGDSHTTGYGEVEETWLNGQTWRWSARIGDYSQLRIFYQGAAYDDKPRGHMPMRLQMVRNSVFWPVVGNFAPTLMRMATAKWEGTDVACILISGAVNDATPTPGRRWEENEYCIDPKTGLLRIHSEAPGIYSVYDYAGAIQFHGRTLPRQTTIVEGGTTVLQIHLDSIEDANNDPNQFVPTKKMISHGPGAIMVGPFRFPEFVHAPAGYSGDIRPVIVHAILDQKGKVLDAEVVGSSDPALSSAALGVVWHSSYRSTQVGDRPLQREAFINVKFTPT |
| Ga0307479_10000002404 | F022484 | AGGAG | MRLAEQVEQMAKKRRLSDNRVLVELIEQGLEAHKEKEKAFFVLTKRFQAACLAGDQNDIKRLGDEMGRFVFGE |
| Ga0307479_10000002407 | F000348 | N/A | MLGLAALARKASSLKKALLIFAAVVLAPVLVVSLAVLAASDWRSIGQTDAGDKVSVSSVHMLKRNQRVALVRVEYKEPTELPQGGPFVEMRARVRFNCSSGTATPTSEWFYSRDRSGRFVVSKKSNRDDEFGNGAEGAFADMVSKNVCGQTK |
| Ga0307479_10000002495 | F000900 | AGG | VGLGTEILFVLILGLLVLGPKQMHALLGHVVRAKAQFEEASRGFKSQLAEELAATHEDGEAEASHELAGDQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |