NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10000021

Scaffold Ga0307479_10000021


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10000021 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216099
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)148 (74.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000132Metagenome / Metatranscriptome1972Y
F000801Metagenome / Metatranscriptome886Y
F000949Metagenome / Metatranscriptome823Y
F075195Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_10000021133F000949N/AMLAAFCGIGTGYADVVVNDLLFTALLVLASCMLLGLLRARWPWRWVIVVGIFIPLTELAAYLIQTVKPTRAQIYGSFLAFLPGIAGAYGGSIMRQVFDNLRQRK
Ga0307479_1000002122F000042GGAGGMTNIKFVVRVSHGGARAPAYVQRIDRTPVQMTTNRKLALIMGKFVAEDAAKLLQSAHCNPELVPVPVTV
Ga0307479_1000002128F000801GAGMEDTQWTVKDLSEALKRFPLDAKVYYEMGPNGPGTIGKAQYVKAWGDGSEMGVLLDR
Ga0307479_1000002140F075195N/AVKIRDLGFKASMHIKMYGERFEIVSDPFDEGDCVVVRATSGNDPEIRTLRLPIAILVGLADRFLKRPA
Ga0307479_1000002150F000132GGTGGMLIEKLAAGVVQVQTPIGPRYVMPSSFFQRAYLVWMFRNFPILPHAVLSRRQQRMIDRMCSEQRFASSAYSDGMNEIPVIGTIEHRPPRVASSMPSRRPPTSEGANVLPAELHQRL
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