NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10000359

Scaffold Ga0307479_10000359


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10000359 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40938
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000515Metagenome / Metatranscriptome1062Y
F000522Metagenome / Metatranscriptome1055Y
F001701Metagenome / Metatranscriptome649Y
F034635Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100003591F000515N/AASVTCYLFSARAIVQAPYMTHFPQPHPSRRAARVQLGSVLAAIRLEDGRRTKAKLQTISVTGGLLALPHSLGDGAFVELAFQTQSGPVHGMAEILSPMRKTTTGVLQPFRFVALEDDDHRRLRTSVDHVADRSLLGLKSSVFVVPKTI
Ga0307479_1000035924F000522GAGGMDHHEAVRKFEHLMLKEADHAREVATELEALVPILTTEKSRQLAQLQIKASHKQAKEFRELAEKVKEK
Ga0307479_1000035926F034635AGGAGLTAAESLILVLLLVSPLAAQNVDFNKSTPERLPPAPVQTTSEPASAKPARVFDKKFFLVMGGLGGAESLRFTTRKLVLDNEFASGAPWVTRLPSNRHIVAKDLVLYSSEFLVAYELKRTHSWIPGDRIIRRLWWAYPAAMTAIHIKNAVGNIHTQGPGGCTSLECAAQPQLLMPAGTR
Ga0307479_1000035939F001701AGGCGGMNSIKFLYAAYIGTWLIHGLYLGSLVRRYSRLRRQMKELGK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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