NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10000510

Scaffold Ga0307479_10000510


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10000510 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34893
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (81.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F001709Metagenome / Metatranscriptome648Y
F008825Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_1000051018F001709GGAMPQEVSVSYQAIKSKVYRLIDSLVVGEKSAIEVQESIRRWWELIHPADRPIAQKYLLIILGRSCGALDAIEEGLTDATNHEATQSSEAAKAFKLVQRVVKQTGKTAALSNSL
Ga0307479_1000051019F000249AGGAGMFFPRDMFWGWGQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPKTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDKNLGPADQGNNGPWGRYMTVGVHKSFGTRRW
Ga0307479_1000051035F008825GGAGMTCVELQESLADVEDGSSLEQSTHLKACPECSALLRELNLIVATAGKLQASDEPSPRVWNSIEIALRQEGLIRPQTGDGDRRSPLPSFSARWGWARWLVPAAAMLLLAVGIYERRQSIASRPSEQAAVIAAVLNPSGLNDEDLIQEVAANAPAMQGQYEENLRRVNESIRDAQGAVNESPNDQDARRALMDAYQQKSMLFEMAMDHPLP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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