NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10000612

Scaffold Ga0307479_10000612


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10000612 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32044
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (59.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013251Metagenome / Metatranscriptome273Y
F013338Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_1000061226F013251N/AMAVLLNQTSNLRARLELLRRLSDGTRTPASLEMKLSVDRYRKPDFVPLLEVPHATLLDMDLIQFLQWLEELFDGRRQDAALEASVDPAIGLRFAGGPEAYLVELGVDLLNVLESVGDMKGERGTDLVLYRFQVNKRAALAFCNGLIEEFGEFPTDPARVDPGEAS
Ga0307479_100006124F013338AGGAMAGFMGIPRERWPTAVAMVLLLAFVLSWLQGRFDAGDAKKAIAAAMSWKPAGSRSVFDALAARGEGDPQCVGKVVSQLMGDVEVRCSTPKQPQVEYDFRVLLDGRRPPRPANPPAEQLVASIH
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