NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307479_10064450

Scaffold Ga0307479_10064450


Overview

Basic Information
Taxon OID3300031962 Open in IMG/M
Scaffold IDGa0307479_10064450 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3533
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307479_100644503F000781GGAMLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPTPIASISVQASNGWFDISITDPSDARPGLFYFAESDTTTAFGAPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGAPPIAVAGGGSAGPAPLPSSGSGVFPNGVPRGGNGFGINPGSRIVRQTLL
Ga0307479_100644504F000703N/AMFIREYSEGDLNALRAIHAAQGFDYKLPDLSNPLFVTKLVLTDGNAAAQKENRQLEAGATRGNEPKGNCPIRGAAFLRLTAEAYLLLDPRAGTPRDRWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAERFGKRITRLGWLRDDSWTPFCHKLAAPQQR
Ga0307479_100644505F099605AGGAGMPTTNNAASWDFNPNDPVNLSASFIFDTEDTQDSAPVAAALAAIQSRLSHATLTATQPDAATISITVTI
Ga0307479_100644506F002853GGAGGMSRAQDFTRQLTDQQLASLNSLNQQFLGQQQQVGNLLLPQFQSILNNPGLSPADKAAVTGQSQGALSSAFDSLQQSAQNRLARTRNSAGFGELTDELARQKGIAEAGQAQQNQLAFTNTAFQRQMAALQGLSGLFGMDSNLLGRTLGIPAELLNVRANASRGTGGGFFSALGSGLGSTVGALPGAFL
Ga0307479_100644507F000624AGGAMPIHWFGVLAAVASAGVQFVLFLRWLHRRMRNDEIVSVFVRDIAAIHLPHIYTALHEIGKRQGIELPETPMVRFVDLNGHRRRP
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