NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308420_1006380

Scaffold Ga0308420_1006380


Overview

Basic Information
Taxon OID3300031966 Open in IMG/M
Scaffold IDGa0308420_1006380 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5790
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Herpetosiphonales → Herpetosiphonaceae → Herpetosiphon → Herpetosiphon geysericola(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006418Metagenome / Metatranscriptome373Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F016404Metagenome / Metatranscriptome247N
F051735Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0308420_10063804F016404N/AMTTEELLTDEARAAVLRALFMIVVNDSEPASARVAAARLFLSQFEEHPNAERDVLVIVDEAAFVKTV
Ga0308420_10063805F010840AGGAGGMNLPFSQPLDKITYGALAAATVVILAWALREFVGIDLPAEVRSALAVIIGYGVSYHIPLSEVEAEAIARKYYKYK
Ga0308420_10063806F051735AGGAGMYQDVTIINGPVPKDGVADYERVRIKARPLGRPYVWDNGRAWNPYTTNGGFLLVFECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEVYNSLAEARAGGRGWLIEYALGTE
Ga0308420_10063807F006418AGGAGMPKRRSAPKPQPARELLVAEGEDFRILFDRETRDYAVEYRGQPVGWRAFVEDARRLVEQLRYEDARRGE
Ga0308420_10063809F007976N/AMAATDGVMLVAKKFDVVFMRGEGAISPKAAKVLEALAEATWIRSIEVNGNRVTVTAQSTWYDEKVGAEVAGEYCEVKLPEFYCPRAPVARMLAVLTDEQQGWVQVVENPRIKNVKEWSVKEFVALVDNPHGGYELFRLRDIDDEHWYSVAQLRRGLRLFGARARLSVRRNAKGWLAFEDGYGYTFAVTPFVKHN
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