NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1006936

Scaffold Ga0308403_1006936


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1006936 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10069363F015735GAGGMVVYHHWSVEWHPRDVDPPSGLLRVVCIARRAVSDPWSGPGPFPPDIDRAVRFWNLVASGGARDYGAGYEVVWRLSVVADDADGDALDGAWSDDPVYRARRRLLRWVMRSQCPIPALADHFADEHFRDHPAYFGLLEPGA
Ga0308403_10069364F002372AGGMPTRREDMLWQIVHRKSSHLRVLLDSLDLVDIGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSFSGTEGV
Ga0308403_10069365F002795AGGAGGMSTNNRLVLRGLVAAYREFVSRKDGKLFRVVTVFGDLVVGEVVLCAVDGYDVFVDSPDYARGEMVELPARLQFVRDSSGRPAVRLYVDEGVR
Ga0308403_10069366F008135AGGAGGMRAVIDPRTERVLTEAGASIARVLDARQRHAVVLAVDVVWYIVAALPPDDHMTCRDVVRLLRWFRNGFQEADDVDE
Ga0308403_10069367F002229N/AVTLLTLDGVEDVDYVPSDLEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIRNRRVTATLAAVGWCWVADGCGARGYWSPALACVPAEVRVMCGGCGGCVDDDDGGDEE
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