NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308403_1015225

Scaffold Ga0308403_1015225


Overview

Basic Information
Taxon OID3300031980 Open in IMG/M
Scaffold IDGa0308403_1015225 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F015735Metagenome / Metatranscriptome252Y
F076977Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0308403_10152251F076977N/ATYRVATVFGDLMAGGTVLCQVDGYDVFVDSSYTRGEMVELPARMQFLRDGSGRPVIRLYVDEGVR
Ga0308403_10152252F002372AGGGGGMPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSGAEGV
Ga0308403_10152253F015735GAGGMVVYHHWSVEWHPRDDPPHGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASSGACDHGAGYEVVWRLSVVVDDADGDAPPGGVWSDDPVYRARRRLLRWIMRSQCPLFADHFAVEHFRASPWYFGLLEG
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