NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310696_10293894

Scaffold Ga0310696_10293894


Overview

Basic Information
Taxon OID3300031993 Open in IMG/M
Scaffold IDGa0310696_10293894 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_02 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035593Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0310696_102938942F035593N/AMDSVTLRRSHFNLGDEIKRYRTSSMDQSEGIENYKSPPATLDENLKNELRKSHFVLGNFAPNFNTSFRREYYDKSKMLPKNGIEFSKIERKLRSQNFEFGSDKPDYLSETASKYIIPPLNNANNNQNKVSTALLQQSHYVFGNSNAPWNTTSRREFTPKKVNNVRETKDLTKTNFILGDDKPTLKSVNEETFIRHPYQPNLIDKKLLNDLRSHHFELGKDEVPNQHVTQSQISYQDPKFLSNGTNQNKPFIDNKMLRSSHWTLGDKSQELPDMYNSSYNRAHSPKQIGKKFVKNPNTFKSSFTITGNEPTTFQTNYRANFIPLNSIINEQEKRQIGDIIKTIKSSHFNLGDMKNDYNTVMSSSYVFNPNEAKNARGVLDQHLLNDLRSTHYTLGDDNIVTQTSQRRDYIPYKFHKDSFNKPCLQKSYINLGEKNNNKFAGESIYMSDYVPKELPKEDNNECWC
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