Scaffold Ga0307409_100154409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307409_100154409

Scaffold Ga0307409_100154409

Overview

Basic Information
Taxon OID	3300031995 Open in IMG/M
Scaffold ID	Ga0307409_100154409 Open in IMG/M
Source Dataset Name	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1998
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5	Long. (^o)	-121.7	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026493	Metagenome	197	Y
F072963	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307409_1001544091	F026493	N/A	APTDDRIRETWDRLVLLLISRPRAGWEAEFEEITRREIQRLALPAVKTERDE
Ga0307409_1001544093	F072963	GGAG	MTRTPTRPFDDRSMWRRLVGRSHPDAGGDHELFIWTVATRDAICGGEKPKRERREEPFRRQEASTSSAGERVPFNEYSDFEVLTDRALSMAESVAEPYGFLLTQVADCYAVVEGPLYNQQRRGATYRTLAAIGHTVAMSKAERVGWYRIAETIPLSQRHAGHILSRLKGQAA

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