NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307409_101353078

Scaffold Ga0307409_101353078


Overview

Basic Information
Taxon OID3300031995 Open in IMG/M
Scaffold IDGa0307409_101353078 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)738
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097997Metagenome / Metatranscriptome104Y
F101827Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307409_1013530781F101827N/AAGLDRAPDGRRGGWALRLTRGSTRQPGLVHPEVAILKDRRYEATVWFRASKPGVEVQVNLFELRGGRRFAVDTVGAVATAGAWQRLDVSHDAHRRGAVLAVEILAPNLKRGANLLVDDLAVRAATSAM
Ga0307409_1013530782F097997AGGAMRLRRILAVLGLVAALSLPAAASAAETKSHVGLHDMTCTSITAMGKGLSPNAALDLKLTDRDNGGSLAGQTVRTSAKGEFMVKLPARLNQVLSIRLTVSR
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