NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308176_10459712

Scaffold Ga0308176_10459712


Overview

Basic Information
Taxon OID3300031996 Open in IMG/M
Scaffold IDGa0308176_10459712 Open in IMG/M
Source Dataset NameSoil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas sediminicola(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019547Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0308176_104597121F019547AGGAMSMKAIRMTEKTLARAAMCLLAGAALMLPPATPANAEPGFHPTIIRGTGRPAELQLAYLASFPGGSLEPELDKLNFGAMVPGDPLIPDSEPTVTAGQGDVIVSIHRPLGLSPDDIPAESLFTPVNFGPGSLVRIKATFIAPVGPYATTGGFAIGLVGRIGGKDDLPLEPRVATTVNVRPNQLVRLNVPFGSVETTNMVLPQAAKDAIFSTTNPQPFTLELTIDRTTSPATGTVKLMVIDQVYTLSFTLADFLADGGPAITNVGPGIAVNSNGPGQTASVHVRDFRIYTNVGG
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