NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10068412

Scaffold Ga0315274_10068412


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10068412 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4710
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y
F011843Metagenome286Y
F035676Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_1006841210F035676N/AVKSNFVNNHIRLNGNVHGHKLRLCNKCEELKPPEGGVQMSATKWLCASCWTDRVTSKNLKEMAK
Ga0315274_1006841211F011843GGAMNITLLTKVRQLFNVDYVPRSTNRHNQKQYIKAIRLLGDKWLIHPDNKVQKIQ
Ga0315274_1006841212F003662GGAGMQTKQATVTIDDQEWIVLDTDEPKENKVFCTLTKPDSTIIWHTWVDINQIMGII
Ga0315274_100684129F006063AGGAGMTDLLTALHLSVVMLDLKIRMMEAIEDGQFDYAMTLHLLILVRTDEFDAHKWAMSPRAWAIYETIHP
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