NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315274_10836862

Scaffold Ga0315274_10836862


Overview

Basic Information
Taxon OID3300031999 Open in IMG/M
Scaffold IDGa0315274_10836862 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)969
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5119Long. (o)-110.3577Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007360Metagenome / Metatranscriptome352N
F079787Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315274_108368622F007360N/AMPNIPTPEPQRYADAQLMALLDPSSKRDTILITPGSPMPSRIPDGLTVAETSRGIVITSDPAKVKIIDKGSEKDVGMALFGYAYDQAKGFDNVAVARDRAGTPVAELAIKPGQERRAMRAASLLAPDTGSTNMMSRGDVVGTRLKGLLD
Ga0315274_108368623F079787AGGTGGMANEFDFSSLGNMFGGSLGATPTGLDALLSEDQRKLLGRNAVMSAAAALLQASGRSAVPISMGQALGSALTAGQGAYEKGRASSFQDLLLNQKL
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Institute for Fundamental Biomedical Research
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