NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307414_10598332

Scaffold Ga0307414_10598332


Overview

Basic Information
Taxon OID3300032004 Open in IMG/M
Scaffold IDGa0307414_10598332 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032806Metagenome179Y
F042551Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0307414_105983322F032806GGAGMRARPVRPNIYLPVVRFGVADSDWFSVLLISCICYLAPVPFGITLLYVPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQHQVKALFSNHRQYRFIPNSRKSKFDRPWITDQQEEGRSPPKTSITINSLLLQHNNNVQEVWEDGTPSGL
Ga0307414_105983323F042551N/AIAVVLSILLGVVSVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGETVPVDNQF
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