NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310344_10000386

Scaffold Ga0310344_10000386


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10000386 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35150
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (84.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013821Metagenome268Y
F089039Metagenome109Y
F093981Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_100003866F089039AGGAGMATSKKKGFPGPMTRGQMGAYKGIQKKEYYPGGLDITAGNEMGFRSEGWRVKRGADKRGTFGMKLRKA
Ga0310344_100003867F013821AGGMATNQEARQAAIRAVTSTTGTYDEDWVALFTTRSAPAGTYNERLLSYINTKLSTSHTNLNDAMQALAANQSADNFSSMGTFTP
Ga0310344_100003868F093981GGAMTTNQGARQATCRAAAGSALTVDGDWLAMCDMHGITGTLNERMLKYFNGSLGATWDMASWDEVAWDGADGNHTNINEAAAAFGESNGITGPGSLFSQLGSF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.