NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10000881

Scaffold Ga0310344_10000881


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10000881 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23388
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024572Metagenome205Y
F089038Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_1000088112F089038GGAGMKSWWKSKTFWLNIATLGVASALEQPNPEALAQGLAVANIILRFFTRTEIGR
Ga0310344_1000088130F024572AGGVATTTVDPAMRDRLVTQFRAFICKENGIVPLEHQADWWVTTDGYELTDIVAKKKEKRPTIEVRLPQGKTEKRVLVPRKAGRAKVVAELGAYKSGKSFGAGIWGAAFAAVPNALVYLVGNEYDMTAPEFEYLLEALCSERGLNLGYKTLQNRPKDGRLWLELDNGARFEARSWERSESLKGKEVDAYIYCEAYQLPGIECFTSVSQNLRVRQGYAVFPTTPDRPWVNIFHENGHGNPDFEEWVCKCGVPATVNPISFDQSAMDRDKHLLTREKFSIAYLGRLGDYVGRVYNYQRGDRQFTLQSHPRLWHNPEAGTTKENFKLPEDWRVEIGADTGTYCAAVVIGVSPEGQAYILDELTNYSYVANTPELDPSSSIVNWAGSLQRMAAMWRTRPIAWVDSNSQFKQECLHHGVHLMANKRGREVRTEAARQYFQHEQIFLAPWLKMVPYETEYAQWPEHTSASGKYERLKVNDHALDCIEHVLSRHPRASTP
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