Scaffold Ga0310344_10005102

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310344_10005102

Scaffold Ga0310344_10005102

Overview

Basic Information
Taxon OID	3300032006 Open in IMG/M
Scaffold ID	Ga0310344_10005102 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9766
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7656	Long. (^o)	-158.2256	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065853	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310344_100051021	F065853	N/A	TSLIMLRTLLNDAGCDAVRYTPQRLDDLLITAAYIVPMEVNFKNTYVVDVEARTITPDPLYPTKQEDGDELVNFLVLKAACIADEGNFRTAALAQGVTARIGPASLQTSSYGQYLGTLLNEGPCKSYEELKKIYNMSYDGAKIIRAVMSPFVANDYDPSNMLGSLGTASNQGLGGIYPRY

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