NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310344_10317601

Scaffold Ga0310344_10317601


Overview

Basic Information
Taxon OID3300032006 Open in IMG/M
Scaffold IDGa0310344_10317601 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1333
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7656Long. (o)-158.2256Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014929Metagenome / Metatranscriptome259Y
F020653Metagenome222Y
F057124Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0310344_103176012F014929N/AMPKKLDKLDHKYNEKLAKIRKNNVERHAGYENALKLRANIQRFQRNATYDMELQRLRGATAQGHIAPHAHKRVADLKNILGK
Ga0310344_103176013F020653N/AMSESIQEIPLDIAEQVEDIAEHIAEIEAEDEPIVAPPVRPVEEVKPVIKPKAKGRPRGSLNKGPSKPRAKKTQIQETPVEHGQDSPPAYEPSSPKRNLKLPTDPSTSDVAAAMLKLLQDQSYSRQSRKQRLYNSWFQ
Ga0310344_103176014F057124N/ASATGKLTLSNTTASPADFTIWPADYLKHGLWNPFNSGSIPAYIEGDDCYDVIGFASPYKITGNSTTPITGEGHISVMPYHTLFLHSDLGLQGDALGPDMSSSIVRKIVLETGPGTQVNDFHSLPYDYVSVQPSQIRNLHFRLADYRGRTVDMLHTGLSFSLLFVPEDEF
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