NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310695_10069390

Scaffold Ga0310695_10069390


Overview

Basic Information
Taxon OID3300032007 Open in IMG/M
Scaffold IDGa0310695_10069390 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3509
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023770Metagenome / Metatranscriptome208Y
F096242Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0310695_100693902F023770GGAGMAKVEFDPGIDSVRGILMGTDPFYIRRYPGREGVMHIVQARPNRSDHIPSAAEAHTRIIFAQKYGHEKHIAFLERTLKNQMEIPFD
Ga0310695_100693905F096242N/AMLLKLIKIREMNSGAHCEVWEANLLMGDHFLARVFVLNEHLPLELIYRLTVSWRGICIQGRHCGWQWDNEVAERMVTKYLEQIQASHEEIRIEVCRSKPDLPGYPEVDYHPDDYPIVLIDDLEEDEIPEEPYEEPEYEV
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