NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315316_10000112

Scaffold Ga0315316_10000112


Overview

Basic Information
Taxon OID3300032011 Open in IMG/M
Scaffold IDGa0315316_10000112 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42652
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025051Metagenome / Metatranscriptome203Y
F044544Metagenome / Metatranscriptome154Y
F056674Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315316_1000011213F056674N/AMANEKKLMDEIKKFIPKFKQHGQYQMSLSSLIKALQRERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPVEEPITVAEFLKECEDSVGKSFITADHFGEFYKDYVMQINAPVWISTLGQASQKGIVDVVPTDGYIKLVTENIEVEEEEDGSK
Ga0315316_1000011228F044544AGGAGMSNFVVNYCELRACQHWRMGNKCRYHNQSLADSLKYLANMHDSSICEVRRQIDKYRLENLLEDSK
Ga0315316_1000011246F025051GAGGMSKYVNLETAGEWALSRTAFALLLPLTLLSNKNNEIDKKDFIESVSWIKDYRTWKKYWTELVDKSVLIRVDKNTWMVCPHMCYTDGISHNALINKWNEVRNATN
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