NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315316_10198806

Scaffold Ga0315316_10198806


Overview

Basic Information
Taxon OID3300032011 Open in IMG/M
Scaffold IDGa0315316_10198806 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030460Metagenome185Y
F059451Metagenome134N
F079327Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0315316_101988062F079327AGGAMKQNYYIYKLARQQEKTSYHFFDVKMGDSIDRDAVYYGLTQDPQSRLSKHRPKKGQDISLIVIAEFNNPWEALEHEATLVAKHYRAYGKEPECQGMANTGHRGA
Ga0315316_101988064F059451GGTGGMSMLYTYIKRAEEAPALSRDQIRNEANAFINLRSHIMAWDSLAKDSRNKNDWNNFAKYVLKEVQEMATKIKEAEK
Ga0315316_101988065F030460GGAGMLRSEIITGIQALRYFLEKNHSGHPDDLEYYEEVLINCRDAVLLNEANDPYSKY
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