NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310899_10007849

Scaffold Ga0310899_10007849


Overview

Basic Information
Taxon OID3300032017 Open in IMG/M
Scaffold IDGa0310899_10007849 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3064
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022629Metagenome / Metatranscriptome213Y
F023300Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0310899_100078493F023300AGGAGMRKARVLMAVIALGLAVSVGHALADGPSAGFSGAKVAQIKFLDPKLNLVQLSDGMELRAPDRNMLTNLKVGEWVKVDFVSDGGERAVINEIEAAQPDEIPGPTPTAIGGISNDG
Ga0310899_100078494F022629GAGGMWLDRYADICRECLDLVAVYEASDGRIALLLRHTLVPLPEEFASMRRMTRGAARAAAVKLRRAGLRGELLVLQWQPLGAAAAIMRDWGVRYDADPVRRAQLTAVAERYAADERYLARQLQARQRLSPRTVGAPPPFAASDELLGLQSWYDAMAPTWLSIEPLLRRALVLKTHRWIAEHILIPAADGLTSAAQIREATAGLGEALIEMIPPDDRGVWSVWVGLVVGDLQRALHQPSGDWNQAWARWLLLIAYSVPVPRERPAPVWPAKLTSLSALLH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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