NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315272_10036773

Scaffold Ga0315272_10036773


Overview

Basic Information
Taxon OID3300032018 Open in IMG/M
Scaffold IDGa0315272_10036773 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2214
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022846Metagenome212Y
F036167Metagenome / Metatranscriptome170N
F047595Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0315272_100367732F036167AGGAGGMRRFTITDIMEGNGQPHPAFTHTATYPVLDVLLPSAGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF
Ga0315272_100367733F022846GAGGMPIAAPEELGRELSDLAFGIIEQNWLAEHIGKAVDVKRLDPMQASAAEWELTYLILFAITSGCGTCAATDRDRTTAALKAFHSTFLKQIGEQVGQDIVNAHEKNLVPRYRLYGQTLEGEDTTYPYKTRYQRLGEAAAIQLLGKPIEDPQTADIFRETIKVIFTEVREAVIKVMRHPQVAPVQGEA
Ga0315272_100367734F047595AGGAGMDFDIGSNQYRNATNGIEIDGMAQLSFEHNRRYNEMMLRGLIFDQRGALVAQIAENSLCMNIQGEFEMQSEYPVVKLLRRETEDVLLEVKFLDDNRVQIHKAKLYSGKGTPFEITPTLWKLKDDTHSGENV
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Institute for Fundamental Biomedical Research
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