NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315296_10084051

Scaffold Ga0315296_10084051


Overview

Basic Information
Taxon OID3300032020 Open in IMG/M
Scaffold IDGa0315296_10084051 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5367Long. (o)-110.4246Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315296_100840512F093178GAGMSHLKNYLFPTSICLVAIGIIFVLVWLNATESMSYADLKTVLTTTTGTFGSMLGIITAGLMFTQGKFSELASELSEKVPDYLAKILSLEKIQLIENHLLVLRKTCTNLAATTTIIEERDLFERIAAKASSIFVNFAVILNLKLKQQGLPDTSLIISEMDSNLYRVYEKKRKSIKKEWQIFNIIKQLVDIWEAPTSFFTEKANRKSALQADLKSSISLLKLKERVEGSSTSHSEVVKTLDDLSDEIGDVSKRLHEDRIPQLLFQMEQAGTIRGKYFYLALIFIAAPLLINLLILPQLSETTITFFKQIISVTSILSVMGVLFLLLYIHKILNV
Ga0315296_100840513F039458GGAGMKKTVEEQMKVLLTKHSEPPLEVIIPILEKAGRGEQELTAHIYDIDSSLTKGIKEIFGLKDKNMKTLAKVVEIVFGAGGLKIEPIELSESRFSLSISDCPMLHVGKNVSLNVKSKFCDLCCTSGSRALMDTVLGQDRGTCFWDKSLIKGKGKCRLVFELVKTR
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