NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318507_10177319

Scaffold Ga0318507_10177319


Overview

Basic Information
Taxon OID3300032025 Open in IMG/M
Scaffold IDGa0318507_10177319 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)916
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000596Metagenome / Metatranscriptome999Y
F002728Metagenome / Metatranscriptome534Y
F039747Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0318507_101773191F002728N/AMAREELKWQNIDADDLPAAVKKSFDAMVEAEATFKADLEKLLKNEGHMP
Ga0318507_101773192F039747N/AMAKKLRRLEPRDLALVADLELEGAWRVEYFDGDGAGYVAVFAGQSAEVRVRDYYDAIKRGALKTRIADAEVVTAKKVVSFPQKRRRPVR
Ga0318507_101773193F000596GGAMLGIICALLAAMPNLIGCESSRSQDYQFEKQVRRAQECRQLQDKLVGDQPLTPEHGEEIANTMAGAGCTARLPPWCW
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