NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310697_10017108

Scaffold Ga0310697_10017108


Overview

Basic Information
Taxon OID3300032030 Open in IMG/M
Scaffold IDGa0310697_10017108 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6603
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0310697_1001710810F051210N/ANLINYMNTQYLKMMQTPAMMDALIDSSVSVEDANLRSREYAKMFSRNEDMKDIFGLGNSTNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVSDMRSVIPNLGPDSYQDINTMGGFEMALTPAAITDWSATIGRKLIPGTVRVKIVKVSGGVTTKLELIDNGQGKFMAEPGIITAGTLNYLSGKVEFDLSTAMTTDTGSSITIIGKEDVTGTPCNTNGASNAHANDKRFIAKMQQIGLSTVPDMLVAEYNIAALGAMKKATGADMATFLFGKLREIYTKAINYKLVSTLEEGYAGNTLNDLDLSVNNTDIASKFHDYRSRVDLFDAYLINVETALANKAVKGVDITCYVAGPQACNQFQKGGIIGKWQRNTKMTYISDLLGWYDGIPVLRSTDIQEDTQAHKGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAQELVQKVEFTYGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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