NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310697_10073001

Scaffold Ga0310697_10073001


Overview

Basic Information
Taxon OID3300032030 Open in IMG/M
Scaffold IDGa0310697_10073001 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3253
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0310697_100730013F057003N/AMANFINVSGITYCGKEAQEIFSKDIYDIDLKQYGITFMDGVKGKMKIYTGEIGDAWQLYTCPFTPAGSASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGEWYFGKLRQKMAKEYQEIFWQGDTARTASTKTYLKAVDGVEKKLAGNTGVTKVSLSALTVDNIIGQVEDVIMKGLEVANAAEVDTEGYKVFMNHADVRILEIALGKLCCGNSINDRFKNFGRENGRIYIFGYEIVPSMISGGSILFAPAKNLVLGYDTFDSHIEYKLIDLRETTGDNMFRVLAISNIAVGLIMPELFVYGKVA
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