NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315327_10063181

Scaffold Ga0315327_10063181


Overview

Basic Information
Taxon OID3300032032 Open in IMG/M
Scaffold IDGa0315327_10063181 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2230
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F043442Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0315327_100631811F001066N/AMEGDIFKIKPLDKHASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISSKIIVSEEQKFSKTGDIESIFRQIKAHKTGD
Ga0315327_100631812F043442AGCAGGMKIYFNGNNKAHMEALQECKVKNVVLSFKYSYANITKFRDRFDKLFVVAGTKTEPERYYELLKKHRGVYDYAIQYDVMYNMNETLKHYRKEREMGIDWTIPVLQENYLNHLSQLRLEPDTYVCLGEVHGRDETEDQIRKLPPNLKYHGLAKGRYTTKTKLFESLDTSGWISAAMSKKCEVWNNNSTNFMFFGDKGKAMIPMLNHACEVHKEYLELINLNKQDIINGDYKALLKAPFALLYLPMCKQLNILKDNFNL
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