Scaffold Ga0315327_10657732

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315327_10657732

Scaffold Ga0315327_10657732

Overview

Basic Information
Taxon OID	3300032032 Open in IMG/M
Scaffold ID	Ga0315327_10657732 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	643
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020257	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315327_106577322	F020257	N/A	YDLYEYNPEDRKYADNWYYYATSADDYERAKAENYAMPYWKPDCGYVCWVGENYKIKEVDYGVLPIEELRPPSGAYALQEALRGGHDRIEVIGFDSIAGVFSTSSQLAFKEHDSSAENKIIQDRMDKWTTFYKTVAEHYNEIEIIWHTKED

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