NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308402_1026805

Scaffold Ga0308402_1026805


Overview

Basic Information
Taxon OID3300032033 Open in IMG/M
Scaffold IDGa0308402_1026805 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002795Metagenome / Metatranscriptome529Y
F008135Metagenome / Metatranscriptome338Y
F098761Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0308402_10268051F098761N/ALTRDMILWGKRGVICVYTSPSFQTVDVRLRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPSSAPAPALARRRG
Ga0308402_10268053F008135N/AMRAMNDPRTERLLVSAGTSIARVLDDRQRHAVALALEVCWCIVAALPPDDGLTFGDVVRLLRWFATGFREADDGDE
Ga0308402_10268054F002795GGAGGMATNSGLVLRGMVAAYREFVSRKDGRLFRVATVFGDLMVGEVVLCAVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLYV
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