Basic Information | |
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Taxon OID | 3300032038 Open in IMG/M |
Scaffold ID | Ga0326512_10053029 Open in IMG/M |
Source Dataset Name | Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3097 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.5357 | Long. (o) | -121.7593 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F057035 | Metagenome / Metatranscriptome | 136 | Y |
F064301 | Metagenome / Metatranscriptome | 128 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326512_100530293 | F064301 | N/A | MAKTKGITARTVRLPTKVTPVWQIGIIFPNGNKIMKPKCTLNEIFLTYFLDLEKYLSKGYTSEQLLELYKKTYTNKGIKVGINYIDSWGHKWTGKVAWPRESKFIEFLNNKLNEIQ |
Ga0326512_100530295 | F057035 | N/A | MTEKEFLEKRIPIWLEGDDLHVSTPSNMDKNDMHVFLSKKYGYNWLFAIRGYYWPESHVTLYIGDYECPNCTTLVAPYLFNYFPDIKYVGFGCNKGKPGEIWEPKIIIVKNMSCINNDIFSKQTEKSI |
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