NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308400_1004036

Scaffold Ga0308400_1004036


Overview

Basic Information
Taxon OID3300032045 Open in IMG/M
Scaffold IDGa0308400_1004036 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4156
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012577Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0308400_10040366F012577AGGAGGMFVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVISTTKWKPVGSGFMPNSGYNSRPDLWEYEFIPGNLFITIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTRTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWVVGVRASGNETTVGATSVAFLARINDPGTGGINAGSLSTALIARGGCCDIYLPSQTIVDIENPNANIREIIEHVRTDYSSVRYHLKRFLRDRPRPTIDFRTDSTLVWRFPETTRVVDISKAPSRIFAQYRGYWTDHLTATTTIQSLESRRRLARRVAGVGEYNSKTTADARRDEAAIALDRQIAPITVELDNSRYELMTREGVAVPNWAADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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