NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315289_10255237

Scaffold Ga0315289_10255237


Overview

Basic Information
Taxon OID3300032046 Open in IMG/M
Scaffold IDGa0315289_10255237 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1856
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006063Metagenome / Metatranscriptome382Y
F035676Metagenome171Y
F052461Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0315289_102552371F052461N/AFHALFVEMKTKAGVVSGKQSAVGLQLNAKGYRAVVARSAAEAIKTIEDYLNGTQHTG
Ga0315289_102552376F035676GGAMKSNFVNNHVRLNGNMYAHKMQMCSRCLREKPPEGGVEMSATRWICASCWTDRETGRQLKEGRENK
Ga0315289_102552377F006063GGAGGMTDLLTALHLAVLLLDLKIRMMQAIDEGMFDLAMTYHLLILVRTDELAAHKWAMSPAAWKIYETI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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