Basic Information | |
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Taxon OID | 3300032046 Open in IMG/M |
Scaffold ID | Ga0315289_10255237 Open in IMG/M |
Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1856 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5072 | Long. (o) | -110.3564 | Alt. (m) | Depth (m) | 87 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006063 | Metagenome / Metatranscriptome | 382 | Y |
F035676 | Metagenome | 171 | Y |
F052461 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315289_102552371 | F052461 | N/A | FHALFVEMKTKAGVVSGKQSAVGLQLNAKGYRAVVARSAAEAIKTIEDYLNGTQHTG |
Ga0315289_102552376 | F035676 | GGA | MKSNFVNNHVRLNGNMYAHKMQMCSRCLREKPPEGGVEMSATRWICASCWTDRETGRQLKEGRENK |
Ga0315289_102552377 | F006063 | GGAGG | MTDLLTALHLAVLLLDLKIRMMQAIDEGMFDLAMTYHLLILVRTDELAAHKWAMSPAAWKIYETI |
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