NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10123686

Scaffold Ga0315330_10123686


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10123686 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031892Metagenome / Metatranscriptome181Y
F066695Metagenome / Metatranscriptome126Y
F084085Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0315330_101236862F066695N/AMAELLTDDIIIEALDSDGIMQEPDANWLMEYLNSEYGGTLDHTTSWCDKKHMLKIYSESTYDGYDIWWCTHDERPYVSQDGFYYEDYTEWSSRAIDELTSGSDVWVEPHLWDDMEYEFNHELEQWWTDIYEDKFNDKKDELLDSGDYYEDKDK
Ga0315330_101236864F031892N/AMTSLEFNALVNELDSHAQQTMNKKGPEYTTGNEDVLNNFKATAKKLNVDPLVIWYAYFDKQVSSVAAHVNNEDLNKAEPMISRFGDIINYAKLGYALFNERDSL
Ga0315330_101236865F084085GAGMMCKDVMVTLLSLIEKEMKRRIEHSYFEEESDKWSKFHDYIREIRLTINKGGIK
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