NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315330_10330955

Scaffold Ga0315330_10330955


Overview

Basic Information
Taxon OID3300032047 Open in IMG/M
Scaffold IDGa0315330_10330955 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0315330_103309551F003169AGGMGSMVKGLHSIEWWHTIQSGTHHGGRYRKDFLKIFFFGRIAFYEHGGKTGRAMIKYPLYKKNNSRKNTLTYPGLTTVSFDRIITYMQYYYVLAYKGSQCHRYYVQLDPESADILHDVLVSRYDLVQVCDVPYGSVEPDILISPAP
Ga0315330_103309552F003920N/AMLVRTVIIYAVMTVCAVAFHEHTFAVFELREELQMRFMNMWELLDQLEYVTAEQRVIVYQEIQDMREQIQLIIEELIRLDKEQH
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