NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315329_10018743

Scaffold Ga0315329_10018743


Overview

Basic Information
Taxon OID3300032048 Open in IMG/M
Scaffold IDGa0315329_10018743 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3154
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040060Metagenome162Y
F047632Metagenome149Y
F081218Metagenome / Metatranscriptome114Y
F103058Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315329_100187434F103058GAGMKMVIVFDTDDQEGMMNTVKIVDHLAIDYLGKSVDARYKRTFSKIEFIKMLRSFAQDVKRAVQDDETDQDGTGLRFAKVFSEKVWDAKDNGGRYP
Ga0315329_100187436F081218GGAGVKRFQKGDWVKWVGGSYQNLKGIVIDTRESDSRMQPHSRHEVKVIWDGKGLGSLKQRAEGSWQRAACLEILSSVGEDDESR
Ga0315329_100187437F047632GGGGGMKVGDFVRWRDQGNYPGLCGIVTKESRPSLPGNGSPEIFVHWTTFPRDYGVGSGWEKVSDLQLLSTGETE
Ga0315329_100187438F040060AGGAGMIRVGDLVRGHYFHRKIGVVVRIDPVSEMAFVQFTDNKKSWEPLANLRRATA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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