NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315329_10070398

Scaffold Ga0315329_10070398


Overview

Basic Information
Taxon OID3300032048 Open in IMG/M
Scaffold IDGa0315329_10070398 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1733
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F005399Metagenome / Metatranscriptome402Y
F069334Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0315329_100703981F069334N/AMTQKYDRFNLEEQIQNVWQTKDDLNAITERIYDDPDGPMT
Ga0315329_100703982F002348N/AMETKEKWMKYGGWLLSLLSILIGASFLWPHVHVALLGIAFIYLGIRIFNFSTFDEYREKRIKLLHKLLN
Ga0315329_100703986F005399AGGMKMAIELDVFQEIKLDENSGEIVMRPMAEGMDTPLDFIDEEGEPEWTSLLEVLTETMIDPYVVSASTEVPNEKDYHMMVAASEDLFSVANDFARKVEELHTIDPKEYEERMKRFEQGTFWPSEEHESDEEK
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