NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315329_10170031

Scaffold Ga0315329_10170031


Overview

Basic Information
Taxon OID3300032048 Open in IMG/M
Scaffold IDGa0315329_10170031 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052655Metagenome / Metatranscriptome142Y
F056674Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315329_101700312F056674GGAGGMNEKINVKEAVEVMKRGIPKRPKERGDYQMSLGALIKALQKERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEDPITVAEFLKECEDSVGKSFITADHFDEFYKDYVMQIGAPLWISTLGQASTKGIVDLVPTDGYIKLVTENIEEVEVVEDGSE
Ga0315329_101700315F052655AGGAGMTVLILVTGLVLGMFTYQPSWFDTRPHYYHLTYNSKSECQEAREMVKDKGTVCTDKHEMYKT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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