NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318532_10048664

Scaffold Ga0318532_10048664


Overview

Basic Information
Taxon OID3300032051 Open in IMG/M
Scaffold IDGa0318532_10048664 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1452
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011867Metagenome / Metatranscriptome286Y
F056800Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0318532_100486643F011867AGGAGMQLPALRNSVPTSLNGQSIEDFIRNSTQNLQRAAAALPGSGVAGAVYLGFDGTTGVWKLNKEAVDPKGLGRILVPQHGLFEGYIEWANGSPLQKIQRQLLGVHYDEPMTEHLLSKPLSPGAYKKENDGPKATLGFVGFMLDDGANVVFEHSSMGATKAINALATAATQALVAFGELVHPVIELGSSSYENSYRKIYDPKLTVIGYVTDKRVREVNVIADNDIITRPTTSQAKLRRQAKEGPAI
Ga0318532_100486644F056800N/AESEIVATLTSSGASKIKRNGYAVQLKTPTDGPAVLEIRSA
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