NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10073658

Scaffold Ga0315284_10073658


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10073658 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4624
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031032Metagenome / Metatranscriptome183Y
F056429Metagenome137N
F088280Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_1007365810F031032N/AVNQLYLKSDYYIVFMNPSKHKSEWNSLRLIMQVAEINYCVFIDYKLYALEIHAVEKHEFDSYKYNPN
Ga0315284_100736582F056429N/AMKEDLKVMGYYKNTTREQIVQIKDFKKDKVWYETIRQYETNPITEFCCSVERFKRLYIKT
Ga0315284_100736585F088280N/AMKNLFMNCPECGGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGVALDKEEVEDRIGIVDDMIQGMQTRMRMLSDFIKTANKGYLPNLAQKYTNRLELCSRGLGRLLNYKRKLHNLVGN
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