NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_10306991

Scaffold Ga0315284_10306991


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_10306991 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056700Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315284_103069911F056700GGAMFGFLTPQTKDDADPLVSARMVSAWLRHLPTQDVIARQHNVMRVFDGMRQSSRPVDLNRITAIQFLDTALGADRRQLVKQYVESIDRSARIADRAWQAVQEMSQGFVYAYQTALERALSEGTNPRWKPVIPQLFARLLHYHGTDAKLRAFRHERWIPAKWSNLHQLYARALELDVARVPVALASAGPGAMQWSTEQEYIYALLIQQLNMGSLSPVETDWASAQMRAWGRKLKFEAIPRSPEGFYVDLASKRGLARRTGGEAGPTMHFLDTTPLADQLERAIHALRQADIGEPGAAAALSQQRIGVLEKVRPVVVPNLYGELRRAPRTPVTVAAKVRVGLARICTELAPKAVVESANDPDAGNEQIEVFAVADRPRSRRQVPDEQDSLSASIAPVSDPAWQIKDRSVAGLRISAAGGIGQSLVLGALVAVRQSDANDWVLGAVRRLNKVSNDEVEAGVSIIADRIVPITVHAKRATQDDLGMVVNGVDVSVMGTRFDALYLPPPSRPERPLTVKTLIVPTFEYADGRNLILTTGHSVYTIALRHLVEQRAEWSWAAFQIIDKKPTDI
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Institute for Fundamental Biomedical Research
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