Basic Information | |
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Taxon OID | 3300032057 Open in IMG/M |
Scaffold ID | Ga0308421_1013965 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2863 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F050068 | Metagenome / Metatranscriptome | 145 | N |
F064749 | Metagenome / Metatranscriptome | 128 | N |
F079733 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0308421_10139651 | F050068 | N/A | MKRWQNGGMAIVIWHNDKVAITDGLLEKIILGDDDSFWEHALTLDAHEFSHFCSNTIDEHLRGLDWLTLWGEPDGKFPLFSDRQDGKVFAYKKGRSVFFFADRDYRVLLAHVVRGRFDIDVTDNGRALCWTRLTLNEECWKMLAMKMWMSFDNYMGSTYNPEVRLIELEIRNLMEDQRWESAIALAAFACSEAKLRNDEAMFQFFRAICDRVQRFWPPHPKLLDRMAWR |
Ga0308421_10139652 | F064749 | GGA | MIQRADDYVLLCDGPKVALTTRSRARLDDSFWQQFVRDRRLFFWDTDIILNNLASGLRWFDVTQVATAHRHDNLLIRREAGAFIFDVVQDEIVSTIAMCEWKDGRLCPVPIYSSIKCEVILWEHLIDYWNDVYRQAVYDVYGLYAHGWAYHTLLLVYELFDAGKYDYARETIKSAIARAKMEGDDELVARFENLEQQFLAR |
Ga0308421_10139654 | F079733 | AGGAGG | MNDIIICDKGKVTFANPDVWHLQNDNWFSEPMPAAQWREKCENELQRLCQSQHWIDVWSLPGDVSLPYDKRLTRVGQWCISRIDASYDDGQLRQLVIFTHFDGRVISETPTYMRGANDRLVKLVPGMEEYDDAWGFDDEGWLFYLEDIPRIWNNLYQRRLINAVADELLGLSLTMDWRGRLARLIRRLMSEGNYDDAIQVAACASARFEHEEWPGDNHFAVVRKQMMKVLATNEL |
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