Basic Information | |
---|---|
Taxon OID | 3300032058 Open in IMG/M |
Scaffold ID | Ga0308419_1004285 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8726 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000642 | Metagenome / Metatranscriptome | 965 | Y |
F000855 | Metagenome / Metatranscriptome | 859 | Y |
F001381 | Metagenome / Metatranscriptome | 709 | Y |
F002978 | Metagenome / Metatranscriptome | 516 | Y |
F004024 | Metagenome / Metatranscriptome | 456 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0308419_10042851 | F002978 | AGG | VSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSALPAVLPGSGA |
Ga0308419_100428517 | F004024 | AGGA | MLSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLAVATPRLYDRVAPIVESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR |
Ga0308419_10042852 | F000642 | AGGAG | MQEISIALALCAVGAAVWYMRRREAGAGRVTGWLLLYDDVGGWRALPAVYGDSGIVADGVTYPASLPAVRVDRTLIWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRIVGVVLPAAFAYATWAQVAGLQALVAQILALVGDK |
Ga0308419_10042853 | F001381 | GAG | MQYVIATLYVLCWLALAALAALVLPIWALPVALVQLAVAYVMLRAFWLTVARDDDGA |
Ga0308419_10042854 | F000855 | GAGG | MDWLEDFFSKIVGWLDEISASVHNAIIGWVNSLIEVWNGWMDSLLHPAQAMPSSPALRWIVDWLGGIVDYTRLMYMLVDYVAYAQVVQQALLAQIAIITVGLGFRAWLVIRRIVLVS |
⦗Top⦘ |