NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308419_1004285

Scaffold Ga0308419_1004285


Overview

Basic Information
Taxon OID3300032058 Open in IMG/M
Scaffold IDGa0308419_1004285 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8726
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308419_10042851F002978AGGVSSVRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSALPAVLPGSGA
Ga0308419_100428517F004024AGGAMLSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLAVATPRLYDRVAPIVESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSDR
Ga0308419_10042852F000642AGGAGMQEISIALALCAVGAAVWYMRRREAGAGRVTGWLLLYDDVGGWRALPAVYGDSGIVADGVTYPASLPAVRVDRTLIWIARCDAAALIEHQALERARESAALASLWKGGGQWIDFLRIVGVVLPAAFAYATWAQVAGLQALVAQILALVGDK
Ga0308419_10042853F001381GAGMQYVIATLYVLCWLALAALAALVLPIWALPVALVQLAVAYVMLRAFWLTVARDDDGA
Ga0308419_10042854F000855GAGGMDWLEDFFSKIVGWLDEISASVHNAIIGWVNSLIEVWNGWMDSLLHPAQAMPSSPALRWIVDWLGGIVDYTRLMYMLVDYVAYAQVVQQALLAQIAIITVGLGFRAWLVIRRIVLVS
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