NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318553_10339971

Scaffold Ga0318553_10339971


Overview

Basic Information
Taxon OID3300032068 Open in IMG/M
Scaffold IDGa0318553_10339971 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003418Metagenome / Metatranscriptome488Y
F005651Metagenome / Metatranscriptome394Y
F025580Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0318553_103399711F003418N/ALYVTATKVPDIEASQRTGTFWRVQTDAVGLPLLPGRL
Ga0318553_103399712F005651GGAMKADERSFRIALVADRFVNPPPGGVDAVAAAAQAGWGVMQLPPDDYPAEVTGPLLAEVAEQVEEFSRHGYAFAVVGGHPGLAGALARAGIAVPDQITPATAVQLINFLNGRPAPAAGWGPSQVPG
Ga0318553_103399713F025580N/AISVRVGQGEDVVLVGVEGSPSMGVTVTSSDPLRGGRPEWPDGTAEHISGEGIFVEEIRNALARRGINFPRVAGETHALAGHDEASQRAGIESVLDNP
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