NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315282_10000024

Scaffold Ga0315282_10000024


Overview

Basic Information
Taxon OID3300032069 Open in IMG/M
Scaffold IDGa0315282_10000024 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)349299
Total Scaffold Genes385 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)304 (78.96%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013170Metagenome273Y
F053031Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0315282_10000024147F013170GGAGMSIHLHTTVSKKTNEMLLELSKTYGTKNRVIEQALETMLRVEKVGSCEDCAVKTKMKEQINLREALDLVSIGKKTADGLLEVAIGDTTLKDFLREQKEEAKNTIEILKGSVTWKKPSNFKEFMMVLGEIRDLTRIFEIASYSEIDSTVILRPNSFSRLPEIVAFDIATILEGLQMSFEMRLMGEDIAVKMMRQEMYPLKRKELGELLSEQIEKRLSSSVPGLFRNTLMLVGPAFMSWAEKHLEEPITDFGSFLEDLRIALGGGELPSEPKEFVDSLLSAFIKMNWFKQAKILKDIDEKTLDIAFQSTTPSVSRLSIVMLSVVLATRGWKLLRFSVEQTTANATIQYVGPEDQSLMDQIVEVSLYQTIGKQFLDVIPVPREVFTSFESRVYDSNREKFNETYHVMGVRVSNAIRMLARNDPDKIKRLAQNFILKNVGSIQPDAEVRFVDDEHFTVIFKKIDTLLMSSQRSLIESMFRELGYEIQSTAFQNLLSFKLKPLEKPVLEPVPRKKLMEALINEMSANSCDEAFEKVKEPIDEMFPEDYPWTIREAGERLIDMYRELDVEVEIEYFEGGFTLKYKTCPYYTLVKSGQKIWLCSLRKKVIDYILSRVSHGRKGKIKIIKSLLKNEHPCEYAIFLTGFLEEE
Ga0315282_10000024364F053031GGTGGMEKDPILVFDKPDFVVRLHKEWIDVDLKVGGKAKLERVIEKDPLLRKTIGFVLQSTIPSDVELCDIESVEVDGKGQLKLVIPRHVDIVLPLGVDDANRLACELKDLIPLAKTKKKADRKRIPLHMWWPTYIGESGIRY
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