NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315282_10003390

Scaffold Ga0315282_10003390


Overview

Basic Information
Taxon OID3300032069 Open in IMG/M
Scaffold IDGa0315282_10003390 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28636
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011725Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0315282_1000339027F011725AGGAMFRLERENPLPALPDIRSVRLLVGLAVLALWAPAPVLAWGGQVRLTRRYQSGRKMVYATKMHTKAVIHSEPPELQNFLPPLPTDFSMQQQNTVTIKGVHSDGSADIENHFDKFEFQSDLAQRVPENFRDATVKATQEISEHVAGQDIVAHYDRSGRLLGFEGGEGLFEQLDLAYREPLRQALRLFLEQVGGESLYPEHPVKPGQVWRRKLDSPASTAYPYNVEGENTLRYVGKTKVGGVKAAVVECSFVNVVRPALGALGKAEPLAQLQSHGLGVDMRIDGRGQGRVVLALDDGRVLQNHATIHQTLSARLESSASLPFTKAQPLKLEVQSDSEIDVVGAPK
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