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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032069 Open in IMG/M |
| Scaffold ID | Ga0315282_10006280 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19967 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (83.33%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5099 | Long. (o) | -110.3581 | Alt. (m) | Depth (m) | 87 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017431 | Metagenome | 240 | Y |
| F019267 | Metagenome / Metatranscriptome | 230 | Y |
| F022798 | Metagenome | 212 | Y |
| F023263 | Metagenome | 210 | Y |
| F040975 | Metagenome | 160 | Y |
| F041547 | Metagenome | 159 | Y |
| F041548 | Metagenome | 159 | Y |
| F048047 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315282_100062801 | F041548 | GGAG | MDTQSLQIQALITFVMPLLIQLAKRSQSAAFAWIDQSKPRICVLTSGVTALLTSMGIEFVRAPHSLTVSWPDTATLVRGLVTFLVSAVLQFAAQHVLYDGFWRHVVPSAGVRRQETGARS |
| Ga0315282_1000628013 | F023263 | AGGAGG | MLGNQGLTAAKFDTNIRALRGTVMSLPVSNPSTESDFYVGLPSGFNTVPAGVLSQDVVEPGYPLTSELWLDPTTSNPINGSTPPWPFVSQGRAWGLIISAAEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGNTAYVVGKAKYPSTAVNQRIRIQVSLRQTKV |
| Ga0315282_1000628016 | F019267 | GGAGG | MSASATFTTLYSFREDRRRLYRRVRVDITGLASGANTIAHGITKRENPAQGATPIDEQVLLSSNVAVHRTQAADATNLYYTVDSGSGTTISVYVTV |
| Ga0315282_1000628017 | F022798 | GAGG | MSYTTITQVAGMFPTFTRNGPKGPSDTLIQNFIDDVAGELDAILQRRFQEAYANLGFTAWQGTFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDEFRELCNKLNARDADGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGGDQYPSETSSEDSTNVFKKWDRREF |
| Ga0315282_100062802 | F041547 | GAGG | MISAGEIQALLLGSGGFIGTSMAGVGAYRLFAAATRGVMRVPASLDKGAESLERMVQAVETQNAVSDQVMELKGLLMATREEILKMGNEREQIGRELRLMSRKIEAFSCYVQEE |
| Ga0315282_1000628020 | F048047 | GAG | MSVNGIAKAEDFKRALERANVERVVLPASGLPVLLCRPPVFAALAMGRAGTQLQARVTDAKPEEIKTEDIEAFTQWLTGTLTRLFVQPRFAAAPEADEIGLADILIEDLKFIFRWLRGEVFSTGNREQGTGDRDQTPVTCHLSPVTSTEDLGRFPGGQRAAPVLGGSGEAQPLPPERALGALGDAGLPAGLHCG |
| Ga0315282_1000628023 | F040975 | GGA | MINGNQTWQAGLNASQKQPLYVLQIPQFGIVLASFTQSQIQSLTQSGYGAMQWGIGGWGT |
| Ga0315282_100062803 | F017431 | AGAAGG | MAKVKTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLTGVEFHLRYMRDRGWVELGIEKKVGQPEVIRWTRITANGVDEYDRRCAALGEAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |