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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032069 Open in IMG/M |
| Scaffold ID | Ga0315282_10008817 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16221 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (58.82%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5099 | Long. (o) | -110.3581 | Alt. (m) | Depth (m) | 87 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007097 | Metagenome / Metatranscriptome | 357 | Y |
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F016487 | Metagenome | 246 | Y |
| F042698 | Metagenome | 157 | Y |
| F083583 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315282_1000881711 | F008672 | AGG | MWVPYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGVPGSYAPFAEYDLALLPVEQFPALLLTPDVVSFDEEANATLHQSLRLTCALALAHQERNTLAEMTQDYVRAVRAVLDTFWESSPGDFLLTTLPLPSPPFPNGALSPGLASGKLMKIFVDGHTFEEIRRGAQSGFVMAATMSIIVEIEET |
| Ga0315282_1000881712 | F011724 | GAG | MSYCTVDDVCTAFPRFVRNTPNSIQDTQIQDWIDDRKARIRSAFYARAIDPDALELTPDQANFLRALNRDGAIADLGDALQGNVSLQPGEYSQAAERRASFERQIAEIKQGLYDKFFSPLARTVEIEPTLGGAAGGETDRSTAQDRSENKAFSKDQTF |
| Ga0315282_1000881713 | F042698 | GGAGG | MGISVSSSSPDILVDNRGIMPDLVTLTITGLTAEASNPVPHGLPRTPKRVWFTAVGSGVNAPNCSLDTSTVAAGYDATDLYICTPAGVTSVLAHVEY |
| Ga0315282_1000881715 | F083583 | AGGAG | MSDITAIDQSYHLNYNIEIGKFTCLAADSSVYADGCDVPSGANGQFLGVAQESILPDAMADYAGGQYTLVSGSAWPANAIPPSALGRNIRTRIFGITRVVASGAIGRGAYVNIANAQGEVKAVSEAVGTYINVVGIALDAAVNAGEVIRVLVMPFTYKA |
| Ga0315282_100088173 | F007097 | N/A | MSQLTLSAIPGFFDLGDSAIAAGQPLTDDSLLKISHNAKFGAVRSKVIFMGFYAHGNTVPTPIDPDDGYAYTRAECQFVWMIYSNRAPASGFVPGQASPPAQSSSQPGTLYNFPGGWDVNDATGLVTFRTSYWQNGSEIVNNDGIIKVYAACLRLSLNSLN |
| Ga0315282_100088176 | F016487 | N/A | MIQGNQTWTQALAQLQKQAYYVVEIPDFAIAIASFPPSSQVAATLAGYGVTIYGVGAYGT |
| Ga0315282_100088179 | F010661 | GAGG | MAKSNNIATAADFRQLAESAAWTDPERVQLPKSGLGVIVRRPTKFYWALRRSAWPRELREKLDLIGVGVSAELTAEEKLLLVREDRQMLNEALVDPKPCLAPGSTQFDPNWLPQEDAEFILMYLRGQVLANGQDLGTFPGGEPGHPEGSGGHGAVVRENPQRVVVPRGGSLAG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |